Visualizing Plant Community Change

Quick announcement: if you’re a graduate student doing research related to conservation in the Great Plains of North America, you should check out the J.E. Weaver Competitive Grant Program. We are offering up to five grants of $1,500 each to graduate students. Read more here.

About a week ago, I posted a bunch of nerdy graphs with data from some of our restored sites at the Platte River Prairies. I’ve been glad to hear from at least some of you that found those interesting. However, graphs showing how species richness or individual species occurrence changes over time are interesting, but they only show parts of the overall story. I’ve been playing with another way to better illustrate the full picture of a plant community’s species composition through time.

Photographs can help illustrate what prairies look like and how they change through time, but they only show the plants that are most visually apparent at the time of the photo. This is a 2009 photo of a restored prairie planted in the year 2000. It is one of the two sites I’m highlighting in today’s post.

What I really want to do is to step back and look at an entire plant community to examine how its composition changes through time. The concept I’m sharing today has been useful to me, but I’d love to hear feedback from others. I’d also like help naming the graphics I’ve constructed. When I started, I called them plant community signatures, but that’s doesn’t feel quite right. Help?

(For those of you who are more interested in pretty pictures than data, I did throw in a few recent photos of ice bubbles at the very end of today’s post, just for fun. If you want to see them, however, you’ll have to scroll past all my cool visual data representations first.)

The data used to create these illustrations are the same data I showed graphs of in my last data post. As a reminder, to collect the data, I plop down a 1x1m plot frame, list the plant species within it, and then repeat that over and over across a site (about 70 or more times per site). I can then calculate frequency of occurrence for each species, which is simply the percentage of those 70 or so samples each species was found in.

Once I have the data, I lay it out in a spreadsheet format to display the frequency of occurrence changes for each species through time. However, to make it easier to see patterns, I’ve colored each cell so that less frequent occurrence is light green and more frequent occurrence is dark green. I’ve also tried to group species together in a logical way. The result – at least to me – is a fascinating way to step back and study how plant composition varies over time.

I’m displaying results for two sites here. The first is a 1995 planting that I’ve collected data from annually since 2002. The second is a 2000 planting that I’ve collected data from every other year since 2003. I’m not displaying results for every species – just 60 or so of the species in each site that are abundant enough to be captured fairly regularly in 70 1x1m plots. If you want more details on these sites, you can get it from my last data-heavy post.

SITE 1 – Dahms 1995 Prairie Restoration. A 45 acre mesic site on sandy loam soils planted in spring of 1995 with approximately 150 plant species.

Here is the full graphic for the 1995 prairie restoration. It shows the frequency of occurrence between 2002 and 2023 for each featured species.

Remember to click on the title to open this post online if you’re reading it in an email. Doing that will then allow you to click on each image to see a larger, more clear version of it.

When I stare at this graphic, the first thing I notice is that there are very few examples of species that are on a distinct trajectory of increasing or decreasing frequency of occurrence. Most species simply fluctuate up and down through the years – some more dramatically than others. As expected, most of the most variable species are in the ‘annuals and biennials’ category. I think that’s great, and is evidence of ecological resilience.

Now, let’s look more closely at each of the four categories.

This graphic shows perennial grasses and sedges, including three invasive perennial grasses. Two species show a strong trend of increasing abundance. One is a native sedge (Carex brevior) and the other is Kentucky bluegrass.

Looking at the perennial grasses, it’s clear that big bluestem has been a dominant feature of this site for the duration. That’s fine, but not particularly surprising to me. What’s more interesting is the increasing abundance over time of both short-beaked sedge and Kentucky bluegrass. I’m happy about the sedge becoming more common. It’s a cool little plant. Kentucky bluegrass, of course, is less exciting because it has the potential to form monocultures and decrease plant diversity.

However, and this is really important, I’m not seeing any evidence – either here, in my other analyses, or on the ground, that Kentucky bluegrass is having a significant impact on plant diversity. Now, that could certainly change, but at least so far, it seems to be just hanging out (though it’s hanging out in a lot more places than it used to). It’s a great reminder that we should always measure the impact of invasive species, rather than just measuring the extent or abundance of the invaders themselves.

I’ll quickly highlight two other species that intrigue me. Little bluestem has become less common across the site over time, though it seems to have stabilized at about 10-20% occurrence in recent years. Simultaneously, prairie cordgrass has done the opposite, becoming more common.

Little bluestem likes drier habitats and cordgrass likes wetter. Does that mean the site has gotten wetter? I don’t think so. Instead, I think what we’re seeing is a long-term self-sorting process of a planted prairie. When the site was planted, the seed mix included way more little bluestem seed than cordgrass seed. As a result, I think the early establishment of those two species wasn’t representative of their actual adaptation to the site. Over time, I think they’ve both shifted around until they’ve settled into the microsites (and abundances) they’re best suited to.

Frequency of occurrence for perennial forbs in the 1995 planting.

I don’t see much drama happening within the perennial forbs at this site. That’s pretty reassuring, actually, given the kinds of stresses that the prairie has experienced. It’s been managed with patch-burn grazing or open gate grazing since 2002, when this data collection started. As a result, the plant community has been exposed to fire, season-long intensive grazing, and multi-year rest/recovery periods. On top of that, of course, are the wet and dry years that can also significantly affect the growth and survival of plants. It’s good to see that none of these species seems to be disappearing (which also matches up with my other analyses of our restored prairies).

The only species I see that seems to show a significant trend toward lower abundance is tall boneset. That’s not a species known to be particularly sensitive to grazing pressure, as far as I know. In fact, I think of it more as a plant that does well with the kind of lower grass dominance that comes after a bout of grazing.

My best guess is that tall boneset is a species that started out very abundant because of both lots of seed in the mix and a slow, weedy early establishment period for this planting. Over time, it might just be dropping in abundance because it’s not as competitive in this soil type when competition from its neighbors is stronger. I’m just guessing here, though. The point is that the graphic helps me identify this pattern and ask questions!

Short-lived plants and their frequency of occurrence through time.

Within the annual and biennial plants I included, it’s fascinating to see how volatile their frequency of occurrence can be from year to year. I don’t see any species with a decided trend – the species seem to just bounce up and down. What’s most intriguing to me is that all the bouncing doesn’t seem to be synchronized across species. In other words, all these short-lived plants are responding to different stimuli as they increase and decrease in their abundance.

SITE 2 – Dahms 2000 Prairie Restoration. A 69 acre mesic prairie on sandy loam soils planted over the winter between 1999 and 2000.

Now, let’s look at the second site (the one shown in the photo at the beginning of this post).

The Dahms 2000 restoration was planted with 202 species, most of which have been found at the site. Here is the full graphic for this planting, showing frequency of occurrence data for about 60 of those plant species.

I’ve only collected data from the Dahms 2000 site every other year, so there are fewer columns. Also, the site was only in its fourth growing season when I started collecting data, so we’re seeing more of the ‘early establishment’ phase of this site than we did of the 1995 planting, which was in its 8th year of growth when I first collected data there.

Frequency of occurrence for perennial grasses and sedges, including two invasive grasses.

Interestingly, there is a little more directional change within the grasses at this site than in the 1995 planting. Is that because the data includes earlier periods? Maybe, but even so, the change seems to continue past the first 8-10 years for at least some species. Big bluestem, Indiangrass, short-beaked sedge, and switchgrass all seem to be on trends of increasing frequency. Canada wildrye seems to be going in the opposite direction so it’ll be interesting to see if/where it levels off.

Both Kentucky bluegrass and smooth brome have increased in percent frequency over time. However, as in the 1995 planting, I’m not seeing any negative impacts on species diversity (yet?).

Frequency of occurrence of perennial forbs in this 2002 planting.

Within the perennial forbs, a few species at the top (stiff sunflower, yarrow, and bergamot) seem to be on an upward trend, at least before the last sampling period. You might notice that there are a lot of species – across all the categories – that dipped in frequency in 2023. I’m pretty sure that’s a consequence of thatchiness caused by a recent lack of fire and grazing, which was intentional on the part of the Platte River Prairies preserve manager (a combination of a scheduled rest period and a response to a couple dry years). I’m confident the numbers will bounce back up again over the next few years as the site gets more fire and grazing again.

Apart from those species, I think the most interesting thing about the perennial forbs is the lack of many obvious trajectories. For the most part, species seem fairly stable in their abundance through time, though some ebb and flow in interesting ways. Some species that have been labeled ‘aggressive’ in some circumstances don’t seem to be acting that way here, including Canada goldenrod and Maximilian sunflower.

Frequency of occurrence of annual and biennial plants in a 2000 prairie planting.

Just as in the first site, short-lived plants bounce around a lot in their frequency of occurrence. The variation over time is evident even though the data was only collected every two years. Once again, I don’t see much synchrony within those bounces, which tells me each species responds individually to the myriad stresses applied to the site over time. Fascinating!

So, there’s my attempt at a visual display of plant community change in our restored prairies. Does the approach seem helpful? Suggestions for improvement? Ideas for what to name the graphics?

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And now, for those of you hoping to see pretty pictures, here are three photos of ice bubbles from a restored wetland at the Platte River Prairies last week. Enjoy!

How did everything work this year?

This is one of my favorite times of year.  It’s not the cool temperatures, the fall colors, or even the fall migrations of birds and insects coming through.  Instead, I like this time of year because it’s time to figure out how this year’s prairie management worked and start planning for next year.  Closing that adaptive management loop (gleaning lessons from one field season and applying them to the next) is really fulfilling for me.  I get to learn something and then put it right to use.  The only downside is waiting another year to see how things turn out again!

Northern bobwhite on fence post. Helzer family prairie near Stockham, Nebraska.

This northern bobwhite was calling from a fence post along the edge of our prairie earlier this summer.  Bobwhite are abundant in our prairie, probably because of the wide variety of habitat types available.

Earlier this week, I walked through our family prairie and tried to capture the results of 2015.  I wasn’t collecting data.  Instead, I took a few photos, wrote a few notes, and looked back at some photos and notes from earlier in the season.  I mainly tried to measure what I saw against the basic habitat objectives we have for our prairie.

Helzer Prairie Habitat Objectives

1) HABITAT HETEROGENEITY.  Provide patches of habitat that cover the spectrum from short/sparse to tall/dense vegetation, with areas of mixed-height structure in between.

2) PLANT DIVERSITY.  Increase plant diversity over time by allowing all plant species a chance to bloom and reproduce every few years, and periodically suppressing grass dominance to allow wildflowers a chance to maintain or expand their “territories”.

In general, I was pretty happy with what I saw this week.  There was definitely a wide range of habitat structure across the prairie.  We began the season by grazing most of the prairie pretty hard to knock back the vigor of smooth brome.  After that, we put the cattle into about 1/4 of the prairie for the month of June and then gradually gave them access to more of the prairie as the season progressed until they were grazing about 3/4 of the site by September.

Helzer prairie grazing. Pasture #2 se of water tank

This photo from earlier this week shows the contrast between the area in the foreground that hasn’t been grazed since May and the background where cattle have been grazing since late July.

Helzer prairie grazing. Pasture #1 nw of water tank

Some of the areas opened up to grazing late in the season weren’t grazed very hard because the grass was pretty mature by the time cattle came in.  However, the cattle did graze in patches, and also knocked down the vegetation as they walked around – altering the habitat and making it easier for both wildlife and people to walk through.

The grasses in the 1/4 of the prairie we grazed in June stayed short all season, and many of the wildflowers were also cropped off.  However, some of those wildflowers had a chance to grow back as we spread the cattle out across a larger area and they became more selective about what they ate.  Other plants went ungrazed, or only lightly grazed, all season.  As a result, the habitat structure was a mixture of short grasses and medium to tall forbs.  In July, I found a family of upland sandpipers feeding in that part of the prairie – their still-flightless chick searched for insects in the short grass while staying near the protective cover of the taller forbs.

Young upland sandpiper. Helzer family prairie. Stockham, Nebraska. USA

This young upland sandpiper and its parents were enjoying a part of the prairie where cattle had been grazing most of the season, keeping grasses short but allowing some forbs to grow tall.  The chick could feed in the open but remain close to protective cover.

Elsewhere in the prairie, the height and density of the vegetation varied by how much grazing pressure it received.  Areas that were rested much of the year were dominated by tall warm-season grasses, while areas grazed from July through September had much shorter vegetation.  Despite the fact that we’re still trying to boost plant diversity across the site (which consists of small prairie remnants surrounded by former cropland planted to grasses by my grandfather in the early 1960’s) there were good numbers of wildflowers blooming through the whole season.  In the more intensively-grazed portions, only a few species such as hoary vervain (Verbena stricta), ironweed (Vernonia baldwinii), goldenrods (Solidago sp.), native thistles (Cirsium sp.), and other species panned by cattle were flowering.  However, there were many other wildflowers blooming across the rest of the site, including purple prairie clover (Dalea purpurea), leadplant (Amorpha canescens), stiff sunflower (Helianthus pauciflorus), several milkweed species (Asclepias sp.), and many others.  The most abundant wildflowers were found in the portions of the prairie the cattle had grazed intensively in 2014 – grass vigor was still suppressed in those areas, allowing both “weedy” and “non-weedy” forbs to flourish.

Regal fritillary butterfly on milkweed at Helzer prairie, south of Aurora, Nebraska.

Regal fritillaries and other butterflies are common in our prairie. I photographed this one a few years ago as it was feeding on common milkweed in part of the prairie was only lightly grazed that year.

During 2015, just about any animal species should have been able to find what they needed in our 100 acre prairie.  Regal fritillaries had violets for their caterpillars and monarch butterflies had milkweed for theirs – and both found abundant nectar plants, including in the most intensively-grazed areas.  The varied vegetation structure supported a wide range of grassland nesting birds, including grasshopper sparrows, upland sandpipers, western meadowlarks, northern bobwhites, dickcissels, sedge wrens, and others.  Small mammal trails were abundant, as were burrows of the badgers and coyotes that hunt those mice, voles, and ground squirrels.  Best of all, there were myriad bees, grasshoppers, katydids, prairie cicadas, spiders, and countless other invertebrates doing their jobs to support and nourish the plant and wildlife communities.

I haven’t yet worked out all the details of next year’s management plans, but I know a few things.  The portions of the prairie that were grazed hardest this year will be rested for most or all of next season.  We’ll likely bump the cattle stocking rate up a little because of this year’s abundant rainfall and strong grass growth.  I’ll try to make sure cattle have early summer access to the areas where I saw lots of first-year sweet clover plants this year – grazing those areas will greatly reduce flowering and seed production.  Finally, I’m thinking about letting the cattle stomp around for a week or two in one of the wet areas they’re normally excluded from because the vegetation is getting excessively thick there.

I’ll meet with my grazing lessee (the guy who owns the cattle) in late fall or early winter.  Between now and then, I’ll likely change my mind several times about some of my plans and come up with some new ones.  Next season we’ll make adjustments on the fly as we see what happens with rainfall, grazing behavior, invasive species, and all the other factors that influence management decisions.  Then, about this time next year, I’ll be walking around the prairie, trying to interpret the results of all those ideas and adjustments.

…and I’ll be having just as much fun as I am now.